For a full description of the work associated with these publications, see my projects or curriculum vitae. You can also find my papers in these databases: PubMed, Google Scholar, SMARTech, SPL, DBLP.

“Aseptic Bone Resorption Following Cranioplasty: A Systematic Review of Overall Incidence And Risk Factors.” Malcolm, Rindler, Ahmad. Georgia Neurological Surgeons Annual Fall Meeting. December 2015. [slides]

“Cirrhosis: A red flag when treating cellulitis.” Malcolm, Webster, and Langah. American College of Physicians, Georgia Chapter Conference. October 2015. [abstract, poster]

“Processing and Visualization of Diffusion MRI”, Malcolm, Rathi, Westin, Recent Advances in Biomedical Image Processing and Analysis, T. Deserno (Editor), Chapter 16, pages 387-410, 2011. [bib]

“Jacket: GPU Powered MATLAB Acceleration”, Larsen, Pryor, Malcolm, GPU Gems, Hwu (Editor), Chapter 28, pages 387-398, 2011. [bib]

“Filtered multi-tensor tractography”, Malcolm, Shenton, Rathi, IEEE Trans. in Medical Imaging (TMI), 29(9), pages 1664-1675, 2010. [bib]

“Filtered tractography”, Malcolm, (PhD dissertation), October 2010. [slides, bib]

“Quantitative Evaluation of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom”, Fillard, Descoteaux, Goh, Gouttard, Jeurissen, Malcolm, Ramirez, Reisert, Sakaie, Tensaouti, Yo, Mangin,Poupon, NeuroImage, 56(1):220-234,

  1. [bib]

“A Full Bi-tensor Neural Tractography Algorithm Using the Unscented Kalman Filter”, Lienhard, Malcolm, Westin, Rathi, J. of Advances in Signal Processing, 77,

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“Biomarkers for identifying first-episode schizophrenia patients using diffusion weighted imaging”, Rathi, Malcolm, Michailovich, Goldstein, Seidman, McCarley, Westin, Shenton, Medical Image Computing and Computer Assisted Intervention (MICCAI), pages 657-665, 2010. [bib]

“A geometry-based particle filtering approach to white matter tractography”, Savadjiev, Rathi, Malcolm, Shenton, Westin, Medical Image Computing and Computer Assisted Intervention (MICCAI), pages 233-240, 2010. [bib]

“Imaging of Meningioma Progression by Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry”, Agar, Malcolm, Mohan, Yang, Johnson, Tannenbaum, Agar, Black, Analytic Chemistry, 82(7), pages 2621-5, 2010. [bib]

“A filtered approach to neural tractography using the Watson directional function”, Malcolm, Michailovich, Bouix, Westin, Shenton, Rathi, Medical Image Analysis (MedIA), 14(1), pages 58-69, 2010. [bib]

“Tensor-kernels for simultaneous fiber model estimation and tractography”, Rathi, Malcolm, Michailovich, Westin, Shenton, Bouix, Magnetic Resonance in Medicine (MRM), 64(1), pages 138-148, 2010. [bib]

“Affine registration of label maps in Label Space”, Rathi, Malcolm, Bouix, Tannenbaum, Shenton, J. of Computing, 2(4), pages 1-11, 2010. [bib]

“Disease classification: A probabilistic approach”, Rathi, Malcolm, Bouix, McCarley, Seidman, Goldstein, Westin, Shenton, Int. Symp. on Biomedical Imaging (ISBI), pages 1345-1348, 2010. [bib]

“Two-Tensor Tractography Using a Constrained Filter”, Malcolm, Shenton, Rathi, Medical Image Computing and Computer Assisted Intervention (MICCAI), pages 894-902, 2009. [poster, bib]

“Vision-Based Range Regulation of a Leader-Follower Formation”, Vela, Betser, Malcolm, Tannenbaum, IEEE Transactions on Control Systems Technology, 17(2):442-448, 2009

“Filtered Tractography: State estimation in a constrained subspace”, Malcolm, Shenton, Rathi, Diffusion Modeling and Fiber Cup (in MICCAI), 2009. [poster, bib]

“Filtered Tractography: Validation on a Physical Phantom”, Malcolm, Shenton, Rathi, Fiber Cup (in MICCAI), 2009. [slides,submission, bib]

“The Effect of Local Fiber Model On Population Studies”, Malcolm, Kubicki, Shenton, Rathi, Diffusion Modeling and Fiber Cup (in MICCAI), 2009. [poster, bib]

“Neural Tractography Using An Unscented Kalman Filter”, Malcolm, Shenton, Rathi, Information Processing in Medical Imaging (IPMI), pages 126-138, 2009. [slides, bib]

“Mixture Model for estimating fiber ODF and multi-directional Tractography”, Rathi, Malcolm, Bouix, Kindlmann, Westin, Kubicki, Shenton, Intl. Soc. of Magnetic Resonance in Medicine (ISMRM),

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“Label Space: A Coupled Multi-Shape Representation”, Malcolm, Rathi, Shenton, Tannenbaum, Medical Image Computing and Computer Assisted Intervention (MICCAI), pages 416-424, 2008. Runner-Up, MICCAI Young Scientist Award [slides, bib]

“Kernel-Based High-Dimensional Histogram Estimation For Visual Tracking”, Karasev, Malcolm, Tannenbaum, Int. Conf. on Image Processing (ICIP), 2008.

“Tracking Through Changes in Scale”, Lankton, Malcolm, Nakhmani, Tannenbaum, Int. Conf. on Image Processing (ICIP), 2008. [poster]

“Localized statistics for DW-MRI fiber bundle segmentation”, Lankton, Melonakos, Malcolm, Dambreville, Tannenbaum, MMBIA, 2008. [poster]

“Label Space: A Multi-Object Shape Representation”, Malcolm, Rathi, Tannenbaum, Combinatorial Image Analysis, 2008. [bib]

“Fast Approximate Surface Evolution in Arbitrary Dimension”, James, Rathi, Yezzi, Tannenbaum, IS&T/SPIE Symposium on Medical Imaging, 2008. [slides, poster]

“Segmenting Images Analytically in Shape Space”, Rathi, Dambreville, Niethammer, Malcolm, Levitt, Shenton, Tannenbaum, IS&T/SPIE Symposium on Medical Imaging, 2008. [bib]

“Tracking with Graph Cuts: Treating Clutter with Adaptive Penalties”, Malcolm, Rathi, Tannenbaum. (unpublished)

“Distribution metrics and image segmentation”, Georgiou, Michailovich, Rathi, Malcolm, Tannenbaum. Linear Algebra and Its Applications, 2(425):663-672, 2007.

“A Graph Cut Approach to Image Segmentation in Tensor Space”, Malcolm, Rathi, Tannenbaum. Workshop on Component Analysis Methods (in CVPR), 2007. [slides]

“Multi-Object Tracking Through Clutter Using Graph Cuts”, Malcolm, Rathi, Tannenbaum, Workshop on Non-rigid Registration and Tracking through Learning (in ICCV), 2007. [slides].

“Quantum error correction”, Malcolm (unpublished, final report for Math4782).

“Tracking Through Clutter Using Graph Cuts”, Malcolm, Rathi, Tannenbaum, British Machine Vision Conference (BMVC), 2007. [poster].

“Graph cut segmentation with nonlinear shape priors”, Malcolm, Rathi, Tannenbaum, Int. Conf. on Image Processing (ICIP), 2007. [poster].

“Seeing the Unseen: Segmenting with Distributions”, Rathi, Michailovich, Malcolm, Tannenbaum, Intl. Conference on Signal and Image Processing (SIP), 2006.

“Closed Loop Visual Tracking Using Observer-Based Dynamic Active Contours”, Vela, Niethammer, Malcolm, Tannenbaum, Conf. on Guidance, Navigation, and Control, 2005.

Friends and colleagues

Matt Might - systems, languages, compilers

Shawn Lankton - active contour image segmentation, stereo vision

John Melonakos and Gallagher Pryor - image processing, co-founded ArrayFire with me


“System for Improving Utilization of GPU Resources”, Pryor, Malcolm, Melonakos, Rehman. U.S. App No. 12/323,572, filed 29 Nov 2007, granted 25 Dec 2012.